PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G176000.1
Common NameB456_009G176000, LOC105768232
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 251aa    MW: 27452.9 Da    PI: 5.2239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G176000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.5e-1194140554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +  rE+ RRd++N++f eL ++l +    +s K++Ka iL  A + + +L
  Gorai.009G176000.1  94 KACREKMRRDKLNDRFLELGSILEPG---RSSKVDKAVILVDAARMVTQL 140
                         678**********************9...9*************9999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.86289140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-893140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-1495165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-1095146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1296162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-897145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MISRRQPGAE DLVSSDNPNA WIFDDYGLLE DIPVPGGDLP SLDPSAPIWS SPSLTCSTPL  60
SVEFTESFGN SDNLNETGSR KRMRSGSSSA SGSKACREKM RRDKLNDRFL ELGSILEPGR  120
SSKVDKAVIL VDAARMVTQL RDEAQKLRES NESLQEKINE LKAEKNELRD EKQRLKTEKD  180
NLERQVKALG SQPGFIPQAP AIPTPFSTSS QVVGGKLVPF VGYPGVSMWQ FLPPAAVDTS  240
QDHMLRPPVA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.17150.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443505.10.0PREDICTED: transcription factor ILR3-like isoform X1
SwissprotQ9FH375e-87ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0D2TRM80.0A0A0D2TRM8_G
STRINGPOPTR_0011s03360.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.18e-77bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]